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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001163511.2 → NP_001156983.1 ATPase family gene 2 protein homolog A isoform 1
See identical proteins and their annotated locations for NP_001156983.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK011111, AL669927, BY106106, CO043526
- Consensus CDS
-
CCDS50895.1
- UniProtKB/Swiss-Prot
- A2ACU2, A3KG23, A3KG24, Q3UMC0, Q9CXZ7, Q9Z2K7
- UniProtKB/TrEMBL
-
B7ZNK9
- Related
- ENSMUSP00000103747.4, ENSMUST00000108112.10
- Conserved Domains (3) summary
-
- COG0464
Location:370 → 882
- SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
- pfam00004
Location:664 → 796
- AAA; ATPase family associated with various cellular activities (AAA)
- cl21693
Location:64 → 132
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
NM_001310473.1 → NP_001297402.1 ATPase family gene 2 protein homolog A isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate internal exon, resulting in a frameshift and an early stop codon compared to variant 1. The encoded isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK011111, AL669927, BY106106, CO043526, DN175568
- Consensus CDS
-
CCDS79900.1
- UniProtKB/TrEMBL
- A0A0G2JFY0, B7ZNK9
- Related
- ENSMUSP00000143349.2, ENSMUST00000198968.2
- Conserved Domains (3) summary
-
- COG0464
Location:370 → 835
- SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
- pfam00004
Location:664 → 796
- AAA; ATPase family associated with various cellular activities (AAA)
- cl21693
Location:64 → 132
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
NM_021343.3 → NP_067318.2 ATPase family gene 2 protein homolog A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is 1 aa shorter compared to isoform 1.
- Source sequence(s)
-
AK011111, AL669927, BY106106, CO043526
- Consensus CDS
-
CCDS17321.1
- UniProtKB/TrEMBL
- A0A0A0MQ80, B7ZNK9
- Related
- ENSMUSP00000029277.9, ENSMUST00000029277.13
- Conserved Domains (3) summary
-
- COG0464
Location:369 → 881
- SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
- pfam00004
Location:663 → 795
- AAA; ATPase family associated with various cellular activities (AAA)
- cl21693
Location:63 → 131
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
37474052..37633245
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030252736.1 → XP_030108596.1 ATPase family gene 2 protein homolog A isoform X2
- UniProtKB/TrEMBL
-
B7ZNK9
- Conserved Domains (2) summary
-
- TIGR01243
Location:322 → 834
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:63 → 131
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_036163197.1 → XP_036019090.1 ATPase family gene 2 protein homolog A isoform X1
- UniProtKB/TrEMBL
-
B7ZNK9
- Conserved Domains (2) summary
-
- TIGR01243
Location:323 → 835
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:64 → 132
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_017319673.1 → XP_017175162.1 ATPase family gene 2 protein homolog A isoform X3
- Conserved Domains (1) summary
-
- TIGR01243
Location:1 → 466
- CDC48; AAA family ATPase, CDC48 subfamily