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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001378285.1 → NP_001365214.1 E3 ubiquitin-protein ligase RNF13 isoform 1 precursor
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS3146.1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
- Conserved Domains (2) summary
-
- cd02123
Location:23 → 180
- PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
- cd16797
Location:238 → 283
- RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
-
NM_001378286.1 → NP_001365215.1 E3 ubiquitin-protein ligase RNF13 isoform 1 precursor
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS3146.1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
- Conserved Domains (2) summary
-
- cd02123
Location:23 → 180
- PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
- cd16797
Location:238 → 283
- RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
-
NM_001378287.1 → NP_001365216.1 E3 ubiquitin-protein ligase RNF13 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS87154.1
- UniProtKB/TrEMBL
-
C9IY58
- Conserved Domains (3) summary
-
- cd00162
Location:121 → 162
- RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
- cl28883
Location:21 → 61
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:119 → 164
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
NM_001378288.1 → NP_001365217.1 E3 ubiquitin-protein ligase RNF13 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS87154.1
- UniProtKB/TrEMBL
-
C9IY58
- Conserved Domains (3) summary
-
- cd00162
Location:121 → 162
- RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
- cl28883
Location:21 → 61
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:119 → 164
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
NM_001378289.1 → NP_001365218.1 E3 ubiquitin-protein ligase RNF13 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS87154.1
- UniProtKB/TrEMBL
-
C9IY58
- Conserved Domains (3) summary
-
- cd00162
Location:121 → 162
- RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
- cl28883
Location:21 → 61
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:119 → 164
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
NM_001378290.1 → NP_001365219.1 E3 ubiquitin-protein ligase RNF13 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- Consensus CDS
-
CCDS87154.1
- UniProtKB/TrEMBL
-
C9IY58
- Related
- ENSP00000355268.6, ENST00000361785.10
- Conserved Domains (3) summary
-
- cd00162
Location:121 → 162
- RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
- cl28883
Location:21 → 61
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:119 → 164
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
NM_001378291.1 → NP_001365220.1 E3 ubiquitin-protein ligase RNF13 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
- UniProtKB/TrEMBL
-
C9IY58
- Conserved Domains (2) summary
-
- cl28883
Location:1 → 49
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:107 → 152
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
NM_007282.4 → NP_009213.1 E3 ubiquitin-protein ligase RNF13 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 4 encode the same protein.
- Source sequence(s)
-
AC117395, BC009803, CB109037, DA031838
- Consensus CDS
-
CCDS3146.1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
- Related
- ENSP00000341361.3, ENST00000344229.7
- Conserved Domains (2) summary
-
- cd02123
Location:23 → 180
- PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
- cd16797
Location:238 → 283
- RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
-
NM_183381.3 → NP_899237.1 E3 ubiquitin-protein ligase RNF13 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' UTR compared to variant 1. Both variants 1 and 4 encode the same protein.
- Source sequence(s)
-
AC117395, AK090638
- Consensus CDS
-
CCDS3146.1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
- Related
- ENSP00000376628.3, ENST00000392894.8
- Conserved Domains (2) summary
-
- cd02123
Location:23 → 180
- PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
- cd16797
Location:238 → 283
- RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
-
NM_183383.2 → NP_899239.2 E3 ubiquitin-protein ligase RNF13 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC117395, AK090638, AK090771, CB109037, DA031838
- Consensus CDS
-
CCDS87154.1
- UniProtKB/TrEMBL
-
C9IY58
- Related
- ENSP00000420667.1, ENST00000491086.5
- Conserved Domains (3) summary
-
- cd00162
Location:121 → 162
- RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
- cl28883
Location:21 → 61
- PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
- cl17238
Location:119 → 164
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
RNA
-
NR_165474.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC069216, AC117395
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
149812688..149962139
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047447380.1 → XP_047303336.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_011512373.3 → XP_011510675.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
- Conserved Domains (2) summary
-
- cd02123
Location:23 → 180
- PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
- cd16797
Location:238 → 283
- RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
-
XM_047447379.1 → XP_047303335.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_047447381.1 → XP_047303337.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_047447382.1 → XP_047303338.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_017005661.3 → XP_016861150.1 E3 ubiquitin-protein ligase RNF13 isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
152563773..152713514
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054345114.1 → XP_054201089.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345110.1 → XP_054201085.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345112.1 → XP_054201087.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345116.1 → XP_054201091.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345111.1 → XP_054201086.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345115.1 → XP_054201090.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345113.1 → XP_054201088.1 E3 ubiquitin-protein ligase RNF13 isoform X1
- UniProtKB/Swiss-Prot
- A6NC87, B3KR12, O43567, Q05D66, Q6IBJ9
-
XM_054345117.1 → XP_054201092.1 E3 ubiquitin-protein ligase RNF13 isoform X2
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_183382.1: Suppressed sequence
- Description
- NM_183382.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_183384.2: Suppressed sequence
- Description
- NM_183384.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.