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    E330013P04Rik RIKEN cDNA E330013P04 gene [ Mus musculus (house mouse) ]

    Gene ID: 107376, updated on 2-Nov-2024

    Summary

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    Official Symbol
    E330013P04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E330013P04 geneprovided by MGI
    Primary source
    MGI:MGI:2147732
    See related
    AllianceGenome:MGI:2147732
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ln-CR9; 9930018I18Rik
    Summary
    Is expressed in cerebral cortex mantle layer; limb; sensory organ; and skeleton. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in limb E14.5 (RPKM 3.1), subcutaneous fat pad adult (RPKM 2.7) and 8 other tissues See more
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    Genomic context

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    See E330013P04Rik in Genome Data Viewer
    Location:
    19 D3; 19 56.52 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (60133107..60151023)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (60144675..60162591)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46663 Neighboring gene predicted gene, 41881 Neighboring gene STARR-seq mESC enhancer starr_46596 Neighboring gene STARR-positive B cell enhancer ABC_E8760 Neighboring gene family with sequence similarity 204, member A Neighboring gene STARR-positive B cell enhancer mm9_chr19:60302488-60302789 Neighboring gene STARR-positive B cell enhancer ABC_E5714 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60370481-60370782 Neighboring gene STARR-seq mESC enhancer starr_46597 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60386552-60386852 Neighboring gene predicted gene, 41882

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of genes controlled by LMX1B in E13.5 mouse limbs. Gu WX, et al. Dev Dyn, 2010 Aug. PMID 20589901
    2. Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. Li J, et al. PLoS Genet, 2021 Mar. PMID 33760820, Free PMC Article
    3. Transcriptional analysis of Gli3 mutants identifies Wnt target genes in the developing hippocampus. Hasenpusch-Theil K, et al. Cereb Cortex, 2012 Dec. PMID 22235033, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026942.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK087735, BC076607

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      60133107..60151023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175355.2: Suppressed sequence

      Description
      NM_175355.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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