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    Ccdc121rt2 coiled-coil domain containing 121, retrogene 2 [ Mus musculus (house mouse) ]

    Gene ID: 625464, updated on 2-Nov-2024

    Summary

    Official Symbol
    Ccdc121rt2provided by MGI
    Official Full Name
    coiled-coil domain containing 121, retrogene 2provided by MGI
    Primary source
    MGI:MGI:3648937
    See related
    Ensembl:ENSMUSG00000072722 AllianceGenome:MGI:3648937
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6588; EG625464
    Summary
    Orthologous to human CCDC121 (coiled-coil domain containing 121). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See Ccdc121rt2 in Genome Data Viewer
    Location:
    5 F; 5 54.72 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (112597292..112599604)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (112449426..112451738)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 Neighboring gene predicted gene 20636 Neighboring gene aspartate beta-hydroxylase domain containing 2 Neighboring gene seizure related 6 homolog like Neighboring gene STARR-seq mESC enhancer starr_14007 Neighboring gene RIKEN cDNA 1700034G24 gene Neighboring gene VISTA enhancer mm1731 Neighboring gene predicted gene, 30529

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC625464

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177504.1NP_001170975.1  uncharacterized protein LOC625464

      Status: VALIDATED

      Source sequence(s)
      AC147377, AK133454
      Consensus CDS
      CCDS51616.1
      UniProtKB/TrEMBL
      E9Q3K0, Q3V040
      Related
      ENSMUSP00000098441.3, ENSMUST00000100882.3
      Conserved Domains (1) summary
      pfam14988
      Location:194399
      DUF4515; Domain of unknown function (DUF4515)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      112597292..112599604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)