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    zgc:113019 zgc:113019 [ Danio rerio (zebrafish) ]

    Gene ID: 550590, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:113019provided by ZNC
    Official Full Name
    zgc:113019provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-449
    See related
    Ensembl:ENSDARG00000099743 AllianceGenome:ZFIN:ZDB-GENE-050417-449
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:113019 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (7131970..7136933)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (7570479..7575435)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 26 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene uncharacterized LOC101886388 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC550590

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017891.1 → NP_001017891.1  uncharacterized protein LOC550590

      See identical proteins and their annotated locations for NP_001017891.1

      Status: PREDICTED

      Source sequence(s)
      BC093417
      UniProtKB/TrEMBL
      A0A8M1N5L9, Q566P6
      Related
      ENSDARP00000132897.1, ENSDART00000161921.3
      Conserved Domains (3) summary
      smart00980
      Location:4 → 95
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
      pfam13359
      Location:339 → 498
      DDE_Tnp_4; DDE superfamily endonuclease
      pfam13613
      Location:257 → 309
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      7131970..7136933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468821.2 → XP_021324496.1  uncharacterized protein LOC550590 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P3A4
      Conserved Domains (2) summary
      pfam13359
      Location:258 → 417
      DDE_Tnp_4; DDE superfamily endonuclease
      pfam13613
      Location:176 → 228
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

    2. XM_021468822.1 → XP_021324497.1  uncharacterized protein LOC550590 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P3A4
      Conserved Domains (2) summary
      pfam13359
      Location:258 → 417
      DDE_Tnp_4; DDE superfamily endonuclease
      pfam13613
      Location:176 → 228
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
    Nucleotide Protein Strain
    Heading Accession and Version

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