U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rrp1 ribosomal RNA processing 1 [ Mus musculus (house mouse) ]

    Gene ID: 18114, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Rrp1provided by MGI
    Official Full Name
    ribosomal RNA processing 1provided by MGI
    Primary source
    MGI:MGI:1203500
    See related
    Ensembl:ENSMUSG00000061032 AllianceGenome:MGI:1203500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nnp1; NNP-1
    Summary
    Predicted to be involved in rRNA processing. Predicted to be located in chromosome and nucleolus. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in nucleus. Is expressed in several structures, including genitourinary system; gut; nervous system; sensory organ; and thymus. Orthologous to human RRP1 (ribosomal RNA processing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 117.2), frontal lobe adult (RPKM 80.6) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Rrp1 in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (78236196..78248877, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (78400362..78413043, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40709 Neighboring gene STARR-positive B cell enhancer ABC_E10623 Neighboring gene LSM7 homolog, U6 small nuclear RNA associated pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:77862123-77862306 Neighboring gene microRNA 6907 Neighboring gene cystatin B Neighboring gene microRNA 6410

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The NNP-1 gene (D21S2056E), which encodes a novel nuclear protein, maps in close proximity to the cystatin B gene within the EPM1 and APECED critical region on 21q22.3. Jansen E, et al. Genomics, 1997 Jun 1. PMID 9192856
    2. High-resolution comparative physical mapping of mouse chromosome 10 in the region of homology with human chromosome 21. Cole SE, et al. Mamm Genome, 1999 Mar. PMID 10051316
    3. Combining global genome and transcriptome approaches to identify the candidate genes of small-effect quantitative trait loci in collagen-induced arthritis. Yu X, et al. Arthritis Res Ther, 2007. PMID 17244351, Free PMC Article
    4. Perfect conserved linkage across the entire mouse chromosome 10 region homologous to human chromosome 21. Wiltshire T, et al. Genome Res, 1999 Dec. PMID 10613844, Free PMC Article
    5. A gene expression map of human chromosome 21 orthologues in the mouse. Gitton Y, et al. Nature, 2002 Dec 5. PMID 12466855

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribosomal RNA processing protein 1 homolog A
    Names
    RRP1-like protein
    novel nuclear protein 1
    nucleolar protein Nop52
    protein NNP-1
    ribosomal RNA processing 1 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010925.3 → NP_035055.2  ribosomal RNA processing protein 1 homolog A

      See identical proteins and their annotated locations for NP_035055.2

      Status: VALIDATED

      Source sequence(s)
      AC160411
      Consensus CDS
      CCDS35961.1
      UniProtKB/Swiss-Prot
      O35712, P56183, Q9ERE1, Q9JI07, Q9JK67, Q9JKU2
      Related
      ENSMUSP00000058785.10, ENSMUST00000062678.11
      Conserved Domains (1) summary
      pfam05997
      Location:11 → 218
      Nop52; Nucleolar protein,Nop52

    RNA

    1. NR_190469.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160411

    2. NR_190470.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160411

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      78236196..78248877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513338.4 → XP_006513401.1  ribosomal RNA processing protein 1 homolog A isoform X1

      See identical proteins and their annotated locations for XP_006513401.1

      UniProtKB/TrEMBL
      Q05CN2
      Conserved Domains (2) summary
      pfam05997
      Location:1 → 156
      Nop52; Nucleolar protein,Nop52
      cl30717
      Location:299 → 424
      InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P56183.2 GenPept UniProtKB/Swiss-Prot:P56183

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools