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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001289530.1 → NP_001276459.1 double-stranded RNA-specific editase B2 isoform 2
See identical proteins and their annotated locations for NP_001276459.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, compared to variant 1, which results in a frameshift and a protein (isoform 2) with a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK046083, AK134964
- Consensus CDS
-
CCDS70428.1
- UniProtKB/TrEMBL
- Q6PB89, Q8BQZ3
- Related
- ENSMUSP00000120757.2, ENSMUST00000123187.2
- Conserved Domains (2) summary
-
- smart00552
Location:366 → 687
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd00048
Location:125 → 189
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
-
NM_052977.5 → NP_443209.2 double-stranded RNA-specific editase B2 isoform 1
See identical proteins and their annotated locations for NP_443209.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK134964, AK139079
- Consensus CDS
-
CCDS26231.1
- UniProtKB/Swiss-Prot
- Q3UTP1, Q8CC51, Q9JI20, Q9JIE5
- UniProtKB/TrEMBL
-
Q3UY54
- Related
- ENSMUSP00000064775.7, ENSMUST00000064473.13
- Conserved Domains (3) summary
-
- smart00358
Location:284 → 331
- DSRM; Double-stranded RNA binding motif
- smart00552
Location:366 → 742
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd00048
Location:125 → 189
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
RNA
-
NR_110345.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site and has a novel 3' terminus, compared to variant 1. This variant is represented as non-coding because the use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK134964, AV327940, BC059822
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000079.7 Reference GRCm39 C57BL/6J
- Range
-
8252475..8818798
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017315647.3 → XP_017171136.1 double-stranded RNA-specific editase B2 isoform X1
- UniProtKB/TrEMBL
-
Q3UY54
- Conserved Domains (3) summary
-
- smart00552
Location:366 → 739
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd19896
Location:122 → 195
- DSRM_RED2_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 2 (RED2) and similar proteins
- cl00054
Location:276 → 349
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
RNA
-
XR_382016.5 RNA Sequence