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    DPEP2NB DPEP2 neighbor [ Homo sapiens (human) ]

    Gene ID: 100131303, updated on 8-Mar-2024

    Summary

    Official Symbol
    DPEP2NBprovided by HGNC
    Official Full Name
    DPEP2 neighborprovided by HGNC
    Primary source
    HGNC:HGNC:52385
    See related
    Ensembl:ENSG00000263201 AllianceGenome:HGNC:52385
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.2), placenta (RPKM 0.6) and 1 other tissue See more
    Orthologs
    NEW
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    Genomic context

    See DPEP2NB in Genome Data Viewer
    Location:
    16q22.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (68013436..68015911, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (73809216..73811691, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (68047339..68049814, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10999 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11000 Neighboring gene dipeptidase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11001 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7637 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:68031810-68032326 Neighboring gene lysyl-tRNA synthetase 1 pseudogene 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:68040489-68041262 Neighboring gene RNA, U6 small nuclear 359, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:68055836-68056586 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:68056587-68057337 Neighboring gene DEAD-box helicase 28

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    DPEP2 neighbor protein
    Names
    CTC-479C5.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282442.2NP_001269371.1  DPEP2 neighbor protein

      See identical proteins and their annotated locations for NP_001269371.1

      Status: VALIDATED

      Source sequence(s)
      BU621438, BX107720
      Consensus CDS
      CCDS82001.1
      UniProtKB/Swiss-Prot
      A0A0U1RQF7
      Related
      ENSP00000488973.1, ENST00000574912.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      68013436..68015911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      73809216..73811691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)