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    Cspg4b chondroitin sulfate proteoglycan 4B [ Mus musculus (house mouse) ]

    Gene ID: 408066, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Cspg4bprovided by MGI
    Official Full Name
    chondroitin sulfate proteoglycan 4Bprovided by MGI
    Primary source
    MGI:MGI:3040697
    See related
    Ensembl:ENSMUSG00000021763 AllianceGenome:MGI:3040697
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human CSPG4BP (chondroitin sulfate proteoglycan family member 4B, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in limb E14.5 (RPKM 4.4), kidney adult (RPKM 2.0) and 13 other tissues See more
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    Genomic context

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    See Cspg4b in Genome Data Viewer
    Location:
    13 D2.2; 13 63.94 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (113429570..113507049)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (113293052..113370513)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35705 Neighboring gene granzyme K Neighboring gene predicted gene, 41069 Neighboring gene STARR-seq mESC enhancer starr_35706 Neighboring gene endothelial cell-specific molecule 1 Neighboring gene STARR-seq mESC enhancer starr_35707 Neighboring gene STARR-seq mESC enhancer starr_35708 Neighboring gene STARR-seq mESC enhancer starr_35709 Neighboring gene STARR-seq mESC enhancer starr_35710 Neighboring gene STARR-seq mESC enhancer starr_35711 Neighboring gene predicted gene, 41070 Neighboring gene predicted gene, 41071 Neighboring gene RIKEN cDNA 4921509O07 gene Neighboring gene predicted gene, 31191

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Chondroitin sulfate proteoglycan 4-like; chondroitin sulfate proteoglycan 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378698.1 → NP_001365627.1  Chondroitin sulfate proteoglycan 4-like precursor

      Status: VALIDATED

      Source sequence(s)
      AC112157, AC124494
      UniProtKB/TrEMBL
      F6RXI4
      Related
      ENSMUSP00000119993.4, ENSMUST00000136755.10
      Conserved Domains (2) summary
      cd00110
      Location:26 → 175
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam16184
      Location:1455 → 1562
      Cadherin_3; Cadherin-like

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      113429570..113507049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158083.1 → XP_036013976.1  chondroitin sulfate proteoglycan 4-like isoform X1

      Conserved Domains (2) summary
      cd00110
      Location:26 → 175
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam16184
      Location:1455 → 1562
      Cadherin_3; Cadherin-like

    2. XM_030247485.2 → XP_030103345.1  chondroitin sulfate proteoglycan 4-like isoform X2

      Conserved Domains (2) summary
      cd00110
      Location:26 → 175
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam16184
      Location:1455 → 1554
      Cadherin_3; Cadherin-like

    RNA

    1. XR_004938045.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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