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    SIRPA signal regulatory protein alpha [ Homo sapiens (human) ]

    Gene ID: 140885, updated on 28-Oct-2024

    Summary

    Official Symbol
    SIRPAprovided by HGNC
    Official Full Name
    signal regulatory protein alphaprovided by HGNC
    Primary source
    HGNC:HGNC:9662
    See related
    Ensembl:ENSG00000198053 MIM:602461; AllianceGenome:HGNC:9662
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BIT; MFR; P84; SIRP; MYD-1; SHPS1; CD172A; PTPNS1
    Summary
    The protein encoded by this gene is a member of the signal-regulatory-protein (SIRP) family, and also belongs to the immunoglobulin superfamily. SIRP family members are receptor-type transmembrane glycoproteins known to be involved in the negative regulation of receptor tyrosine kinase-coupled signaling processes. This protein can be phosphorylated by tyrosine kinases. The phospho-tyrosine residues of this PTP have been shown to recruit SH2 domain containing tyrosine phosphatases (PTP), and serve as substrates of PTPs. This protein was found to participate in signal transduction mediated by various growth factor receptors. CD47 has been demonstrated to be a ligand for this receptor protein. This gene and its product share very high similarity with several other members of the SIRP family. These related genes are located in close proximity to each other on chromosome 20p13. Multiple alternatively spliced transcript variants have been determined for this gene. [provided by RefSeq, Jul 2008]
    Expression
    Ubiquitous expression in brain (RPKM 71.2), appendix (RPKM 27.2) and 23 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SIRPA in Genome Data Viewer
    Location:
    20p13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (1894167..1940592)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (1924358..1970769)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (1874813..1921238)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1809920-1810830 Neighboring gene uncharacterized LOC105372501 Neighboring gene uncharacterized LOC124904857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1856587-1857086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1859821-1860322 Neighboring gene uncharacterized LOC102724545 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1871108-1871632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1876698-1877213 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:1880839-1881408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1882505-1883004 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1917714-1918268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1918269-1918821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1920335-1920836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1920837-1921336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1926175-1926721 Neighboring gene Sharpr-MPRA regulatory region 9993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1928155-1928702 Neighboring gene Sharpr-MPRA regulatory region 1230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17462 Neighboring gene PDYN antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr20:1945208-1945758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:1974244-1975074 Neighboring gene Sharpr-MPRA regulatory region 7514 Neighboring gene prodynorphin Neighboring gene ribosomal protein L7 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.
    EBI GWAS Catalog
    Genome-wide association study of liver enzymes in korean children.
    EBI GWAS Catalog
    Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.
    EBI GWAS Catalog
    New gene functions in megakaryopoiesis and platelet formation.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables GTPase regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables cell-cell adhesion mediator activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein antigen binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding involved in heterotypic cell-cell adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein phosphatase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein tyrosine kinase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in cell adhesion TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in cell migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cellular response to hydrogen peroxide ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cellular response to interleukin-1 ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cellular response to interleukin-12 IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cellular response to lipopolysaccharide ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cellular response to type II interferon ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in heterotypic cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in monocyte extravasation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of ERK1 and ERK2 cascade ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of I-kappaB phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of JNK cascade ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of chemokine (C-C motif) ligand 5 production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of cytokine production involved in inflammatory response ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of inflammatory response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of interferon-beta production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of interleukin-6 production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of macrophage inflammatory protein 1 alpha production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of nitric oxide biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of phagocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of protein phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of tumor necrosis factor production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of T cell activation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of phagocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of reactive oxygen species metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of interleukin-1 beta production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of interleukin-6 production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of nitric oxide biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of tumor necrosis factor production IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in regulation of tumor necrosis factor production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of type II interferon production IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell surface ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cell surface TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in extracellular exosome HDA PubMed 
    located_in ficolin-1-rich granule membrane TAS
    Traceable Author Statement
    more info
     
    located_in membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    located_in tertiary granule membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    tyrosine-protein phosphatase non-receptor type substrate 1
    Names
    CD172 antigen-like family member A
    brain-immunoglobulin-like molecule with tyrosine-based activation motifs
    inhibitory receptor SHPS-1
    macrophage fusion receptor
    myd-1 antigen
    tyrosine phosphatase SHP substrate 1
    NP_001035111.1
    NP_001035112.1
    NP_001317657.1
    NP_542970.1
    XP_005260727.1
    XP_011527475.1
    XP_024307604.1
    XP_047295871.1
    XP_047295872.1
    XP_047295873.1
    XP_047295874.1
    XP_047295875.1
    XP_047295876.1
    XP_054179022.1
    XP_054179023.1
    XP_054179024.1
    XP_054179025.1
    XP_054179026.1
    XP_054179027.1
    XP_054179028.1
    XP_054179029.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040022.1NP_001035111.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001035111.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) uses an alternate, in-frame, splice donor site in the 3' coding region compared to variant 4. This variant encodes a shorter protein (isoform 1) compared to isoform 2. Variants 1, 2, and 3 encode the same protein (isoform 1).
      Source sequence(s)
      AL034562, BC075849, DA471662, DN989886
      Consensus CDS
      CCDS13022.1
      UniProtKB/Swiss-Prot
      A2A2E1, A8K411, B2R6C3, O00683, O43799, P78324, Q8N517, Q8TAL8, Q9H0Z2, Q9UDX2, Q9UIJ6, Q9Y4U9
      UniProtKB/TrEMBL
      B4DP97
      Related
      ENSP00000382941.4, ENST00000400068.7
      Conserved Domains (4) summary
      cd00098
      Location:266339
      IgC; Immunoglobulin Constant domain
      smart00410
      Location:41144
      IG_like; Immunoglobulin like
      pfam07686
      Location:38145
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:143254
      Ig; Immunoglobulin domain
    2. NM_001040023.2NP_001035112.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001035112.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate, in-frame, splice donor site in the 3' coding region compared to variant 4. This variant encodes a shorter protein (isoform 1) compared to isoform 2. Variants 1, 2, and 3 encode the same protein (isoform 1).
      Source sequence(s)
      AL034562, BC038510, DN989886
      Consensus CDS
      CCDS13022.1
      UniProtKB/Swiss-Prot
      A2A2E1, A8K411, B2R6C3, O00683, O43799, P78324, Q8N517, Q8TAL8, Q9H0Z2, Q9UDX2, Q9UIJ6, Q9Y4U9
      UniProtKB/TrEMBL
      B4DP97
      Related
      ENSP00000351621.4, ENST00000358771.5
      Conserved Domains (4) summary
      cd00098
      Location:266339
      IgC; Immunoglobulin Constant domain
      smart00410
      Location:41144
      IG_like; Immunoglobulin like
      pfam07686
      Location:38145
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:143254
      Ig; Immunoglobulin domain
    3. NM_001330728.1NP_001317657.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform 2 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) encodes the longer protein (isoform 2).
      Source sequence(s)
      AL034562, BC026692, BC033092, DA471662, DN989886
      Consensus CDS
      CCDS82593.1
      UniProtKB/TrEMBL
      B4DP97
      Related
      ENSP00000478763.1, ENST00000622179.4
      Conserved Domains (3) summary
      cd05772
      Location:147250
      IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
      cd16085
      Location:252355
      IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
      cd16097
      Location:35145
      IgV_SIRP; Immunoglobulin (Ig)-like domain of Signal-Regulatory Protein (SIRP)
    4. NM_080792.3NP_542970.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_542970.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate, in-frame, splice donor site in the 3' coding region compared to variant 4. This variant encodes a shorter protein (isoform 1) compared to isoform 2. Variants 1, 2, and 3 encode the same protein (isoform 1).
      Source sequence(s)
      AB023430, AL034562, AL117335
      Consensus CDS
      CCDS13022.1
      UniProtKB/Swiss-Prot
      A2A2E1, A8K411, B2R6C3, O00683, O43799, P78324, Q8N517, Q8TAL8, Q9H0Z2, Q9UDX2, Q9UIJ6, Q9Y4U9
      UniProtKB/TrEMBL
      B4DP97
      Related
      ENSP00000348307.3, ENST00000356025.7
      Conserved Domains (4) summary
      cd00098
      Location:266339
      IgC; Immunoglobulin Constant domain
      smart00410
      Location:41144
      IG_like; Immunoglobulin like
      pfam07686
      Location:38145
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:143254
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      1894167..1940592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047439917.1XP_047295873.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X4

    2. XM_047439919.1XP_047295875.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X5

    3. XM_005260670.4XP_005260727.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1

      See identical proteins and their annotated locations for XP_005260727.1

      UniProtKB/TrEMBL
      B4DP97
      Conserved Domains (3) summary
      cd05772
      Location:147250
      IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
      cd16085
      Location:252355
      IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
      cd16097
      Location:35145
      IgV_SIRP; Immunoglobulin (Ig)-like domain of Signal-Regulatory Protein (SIRP)
    4. XM_024451836.2XP_024307604.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1

      UniProtKB/TrEMBL
      B4DP97
      Conserved Domains (3) summary
      cd05772
      Location:147250
      IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
      cd16085
      Location:252355
      IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
      cd16097
      Location:35145
      IgV_SIRP; Immunoglobulin (Ig)-like domain of Signal-Regulatory Protein (SIRP)
    5. XM_047439916.1XP_047295872.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X3

      UniProtKB/Swiss-Prot
      A2A2E1, A8K411, B2R6C3, O00683, O43799, P78324, Q8N517, Q8TAL8, Q9H0Z2, Q9UDX2, Q9UIJ6, Q9Y4U9
    6. XM_047439918.1XP_047295874.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X4

    7. XM_047439920.1XP_047295876.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X5

    8. XM_047439915.1XP_047295871.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2

    9. XM_011529173.3XP_011527475.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2

      UniProtKB/TrEMBL
      B4DP97
      Conserved Domains (4) summary
      cd00098
      Location:266339
      IgC; Immunoglobulin Constant domain
      smart00410
      Location:41122
      IG_like; Immunoglobulin like
      pfam07686
      Location:38145
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:143254
      Ig; Immunoglobulin domain

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      1924358..1970769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054323051.1XP_054179026.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X4

    2. XM_054323053.1XP_054179028.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X5

    3. XM_054323047.1XP_054179022.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1

    4. XM_054323052.1XP_054179027.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X4

    5. XM_054323048.1XP_054179023.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1

    6. XM_054323050.1XP_054179025.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X3

    7. XM_054323054.1XP_054179029.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X5

    8. XM_054323049.1XP_054179024.1  tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2