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    LOC154761 family with sequence similarity 115, member C pseudogene [ Homo sapiens (human) ]

    Gene ID: 154761, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC154761
    Gene description
    family with sequence similarity 115, member C pseudogene
    See related
    Ensembl:ENSG00000291149
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in esophagus (RPKM 6.4), adrenal (RPKM 4.7) and 25 other tissues See more
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    Genomic context

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    See LOC154761 in Genome Data Viewer
    Location:
    7q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (143811968..143836717, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (145092318..145117069, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143509061..143533810, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 Neighboring gene ribosomal protein L26 pseudogene 24 Neighboring gene TRPM8 channel associated factor 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18727 Neighboring gene uncharacterized LOC112267988 Neighboring gene TRPM8 channel associated factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26795 Neighboring gene uncharacterized LOC105375549 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143598237-143598774

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ58905

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015421.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099548, BC033189, BC041464
      Related
      ENST00000494978.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      143811968..143836717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654714.1 Reference GRCh38.p14 PATCHES

      Range
      356270..381021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      145092318..145117069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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