U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nt5el 5' nucleotidase, ecto-like [ Mus musculus (house mouse) ]

    Gene ID: 66763, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Nt5elprovided by MGI
    Official Full Name
    5' nucleotidase, ecto-likeprovided by MGI
    Primary source
    MGI:MGI:1914013
    See related
    Ensembl:ENSMUSG00000021718 AllianceGenome:MGI:1914013
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933425L06Rik
    Summary
    Orthologous to human NT5ELP (5' nucleotidase, ecto-like, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Nt5el in Genome Data Viewer
    Location:
    13 D1; 13 56.92 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (105218630..105258290)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (105082122..105121782)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11556 Neighboring gene predicted gene, 41048 Neighboring gene H3 histone, family 3 pseudogene Neighboring gene regulator of G-protein signalling 7 binding protein Neighboring gene STARR-positive B cell enhancer ABC_E7275 Neighboring gene ring finger protein 180 Neighboring gene STARR-seq mESC enhancer starr_35548 Neighboring gene predicted gene, 25631 Neighboring gene STARR-seq mESC enhancer starr_35549 Neighboring gene STARR-seq mESC enhancer starr_35551 Neighboring gene predicted gene, 41049

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC141320

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC66763

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025751.3 → NP_080027.1  uncharacterized protein LOC66763

      See identical proteins and their annotated locations for NP_080027.1

      Status: PREDICTED

      Source sequence(s)
      AC154281
      Consensus CDS
      CCDS26755.1
      UniProtKB/TrEMBL
      Q9D3Z8, Q9D469
      Related
      ENSMUSP00000022232.6, ENSMUST00000022232.6
      Conserved Domains (3) summary
      TIGR01530
      Location:40 → 470
      nadN; NAD pyrophosphatase/5'-nucleotidase NadN
      cd07406
      Location:40 → 293
      MPP_CG11883_N; Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain
      pfam02872
      Location:328 → 466
      5_nucleotid_C; 5'-nucleotidase, C-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      105218630..105258290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools