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    Lce1k late cornified envelope 1K [ Mus musculus (house mouse) ]

    Gene ID: 631101, updated on 17-Aug-2024

    Summary

    Official Symbol
    Lce1kprovided by MGI
    Official Full Name
    late cornified envelope 1Kprovided by MGI
    Primary source
    MGI:MGI:3702534
    See related
    Ensembl:ENSMUSG00000095870 AllianceGenome:MGI:3702534
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm7055; Sprrl6
    Expression
    Restricted expression toward stomach adult (RPKM 35.3) See more
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    Genomic context

    See Lce1k in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92713598..92715198, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92806291..92807891, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1I Neighboring gene late cornified envelope 1J Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene keratinocyte expressed, proline-rich Neighboring gene late cornified envelope 1L

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    late cornified envelope 1K
    Names
    small proline rich-like 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001254760.1NP_001241689.1  late cornified envelope 1K

      See identical proteins and their annotated locations for NP_001241689.1

      Status: VALIDATED

      Source sequence(s)
      AI428007, AV072477, BY708617
      Consensus CDS
      CCDS57227.1
      UniProtKB/TrEMBL
      J3QP15
      Related
      ENSMUSP00000137052.2, ENSMUST00000179917.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92713598..92715198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)