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    LOC100501207 uncharacterized LOC100501207 [ Zea mays ]

    Gene ID: 100501207, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100501207
    Gene description
    uncharacterized LOC100501207
    Locus tag
    ZEAMMB73_Zm00001d023316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM5G873586
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    Genomic context

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    See LOC100501207 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (2815379..2821211)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (2854338..2860169)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100281201 Neighboring gene uncharacterized LOC109943066 Neighboring gene putative disease resistance protein RGA3 Neighboring gene putative disease resistance protein RGA1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100501207
    Names
    Disease resistance protein RPM1
    putative protein kinase superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362589.1 → NP_001349518.1  uncharacterized protein LOC100501207

      Status: VALIDATED

      Source sequence(s)
      BT084775, DR801183, DV174252, EU951925
      UniProtKB/TrEMBL
      K7TWK5
      Conserved Domains (2) summary
      pfam03195
      Location:339 → 421
      DUF260; Protein of unknown function DUF260
      cl21453
      Location:45 → 308
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      2815379..2821211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023301158.2 → XP_023156926.1  uncharacterized protein LOC100501207 isoform X2

      Conserved Domains (2) summary
      pfam03195
      Location:278 → 360
      DUF260; Protein of unknown function DUF260
      cl21453
      Location:2 → 245
      PKc_like; Protein Kinases, catalytic domain

    2. XM_035963169.1 → XP_035819062.1  uncharacterized protein LOC100501207 isoform X1

      Conserved Domains (2) summary
      pfam03195
      Location:286 → 368
      LOB; Lateral organ boundaries (LOB) domain
      cl21453
      Location:3 → 255
      PKc_like; Protein Kinases, catalytic domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001195990.1: Suppressed sequence

      Description
      NM_001195990.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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