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    LOC100272406 uncharacterized LOC100272406 [ Zea mays ]

    Gene ID: 100272406, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100272406
    Gene description
    uncharacterized LOC100272406
    Locus tag
    ZEAMMB73_Zm00001d017677
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    bHLH53; GRMZM2G111146
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    Genomic context

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    See LOC100272406 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (206651393..206655046)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (204020288..204023942)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100283476 Neighboring gene uncharacterized LOC100283456 Neighboring gene E3 ubiquitin-protein ligase Os04g0590900 Neighboring gene transfer RNA aspartic acid (anticodon GUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC100272406; uncharacterized protein LOC100272406
    Names
    Transcription factor bHLH71
    bHLH transcription factor
    putative HLH DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001146884.1 → NP_001140356.1  uncharacterized LOC100272406

      See identical proteins and their annotated locations for NP_001140356.1

      Status: PROVISIONAL

      Source sequence(s)
      BT038655
      UniProtKB/TrEMBL
      A0A1D6HGI9, A0A3L6EIT8, B4FNG7
      Conserved Domains (1) summary
      cd11448
      Location:90 → 151
      bHLH_AtFAMA_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein FAMA and similar proteins

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      206651393..206655046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020553142.3 → XP_020408731.1  uncharacterized protein LOC100272406 isoform X1

      UniProtKB/TrEMBL
      A0A1D6HGI9, B4FD44
      Conserved Domains (1) summary
      pfam00010
      Location:88 → 139
      HLH; Helix-loop-helix DNA-binding domain

    2. XM_008683136.4 → XP_008681358.1  uncharacterized protein LOC100272406 isoform X2

      See identical proteins and their annotated locations for XP_008681358.1

      UniProtKB/TrEMBL
      A0A1D6HGI9, A0A1D6HGJ1
      Conserved Domains (1) summary
      pfam00010
      Location:88 → 139
      HLH; Helix-loop-helix DNA-binding domain

    RNA

    1. XR_004858135.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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