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    LOC100194336 uncharacterized LOC100194336 [ Zea mays ]

    Gene ID: 100194336, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100194336
    Gene description
    uncharacterized LOC100194336
    Locus tag
    ZEAMMB73_Zm00001d005951
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    hdz10; si606017c07; GRMZM2G041127
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    Genomic context

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    See LOC100194336 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (193261360..193263761)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (193728105..193730506)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene isoamylase 3, chloroplastic-like Neighboring gene plastidic general dicarboxylate transporter Neighboring gene uncharacterized LOC111590835 Neighboring gene uncharacterized LOC100277811 Neighboring gene uncharacterized LOC103647508

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel maize homeodomain-leucine zipper (HD-Zip) I gene, Zmhdz10, positively regulates drought and salt tolerance in both rice and Arabidopsis. Zhao Y, et al. Plant Cell Physiol, 2014 Jun. PMID 24817160
    2. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Zmhdz10 functions as a transcriptional regulator that can positively regulate drought and salt tolerance in plants through an ABA-dependent signaling pathway.
      Title: A novel maize homeodomain-leucine zipper (HD-Zip) I gene, Zmhdz10, positively regulates drought and salt tolerance in both rice and Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Homeobox-leucine zipper protein HOX4; uncharacterized protein LOC100194336
    Names
    HB-type transcription factor
    Homeobox-leucine zipper protein ATHB-6
    homeodomain leucine zipper protein 10
    putative homeobox DNA-binding and leucine zipper domain family protein
    si606017c07(170)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001139372.2 → NP_001132844.1  Homeobox-leucine zipper protein HOX4

      Status: PROVISIONAL

      Source sequence(s)
      BT036856
      UniProtKB/TrEMBL
      A0A3L6FQS1, B4FIB8, K4JBR7
      Conserved Domains (2) summary
      pfam00046
      Location:51 → 104
      Homeobox; Homeobox domain
      pfam02183
      Location:106 → 147
      HALZ; Homeobox associated leucine zipper

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      193261360..193263761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008669079.3 → XP_008667301.1  uncharacterized protein LOC100194336 isoform X1

      UniProtKB/TrEMBL
      A0A3L6FQS1, K0E873
      Conserved Domains (2) summary
      pfam00046
      Location:52 → 105
      Homeobox; Homeobox domain
      pfam02183
      Location:107 → 148
      HALZ; Homeobox associated leucine zipper
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials