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    LOC100216850 uncharacterized LOC100216850 [ Zea mays ]

    Gene ID: 100216850, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100216850
    Gene description
    uncharacterized LOC100216850
    Locus tag
    ZEAMMB73_Zm00001d029963
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    MYBR32; GRMZM2G088524
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    Genomic context

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    See LOC100216850 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (95697382..95699359)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (96573438..96575415)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene long chain base biosynthesis protein 2a-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene uncharacterized LOC118476027 Neighboring gene uncharacterized LOC100285733 Neighboring gene transfer RNA serine (anticodon GCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to gibberellin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Transcription factor MYBS2
    Names
    MYB-related transcription factor
    mcb1 protein
    myb-like transcription factor family protein
    putative MYB DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143242.1 → NP_001136714.1  Transcription factor MYBS2

      See identical proteins and their annotated locations for NP_001136714.1

      Status: PROVISIONAL

      Source sequence(s)
      BT037447
      UniProtKB/TrEMBL
      B4FK09, B6T8B0
      Conserved Domains (1) summary
      TIGR01557
      Location:94 → 146
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      95697382..95699359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials