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    LOC100282357 uncharacterized LOC100282357 [ Zea mays ]

    Gene ID: 100282357, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100282357
    Gene description
    uncharacterized LOC100282357
    Locus tag
    ZEAMMB73_Zm00001d021748
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    bHLH90; GRMZM2G153454
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    Genomic context

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    See LOC100282357 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (165743601..165746504, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (162167604..162170372, complement)

    Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene uncharacterized LOC100383796 Neighboring gene equilibrative nucleotide transporter 3-like Neighboring gene nucleoside transporter

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Transcription factor bHLH130; uncharacterized protein LOC100282357
    Names
    DNA binding protein
    bHLH transcription factor
    putative HLH DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001155269.1 → NP_001148741.1  Transcription factor bHLH130

      See identical proteins and their annotated locations for NP_001148741.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has seven introns; one in the 3' UTR.
      Source sequence(s)
      EU960591
      UniProtKB/TrEMBL
      A0A1D6IF18, B6T6H6
      Conserved Domains (1) summary
      cd00083
      Location:302 → 353
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. NM_001357701.1 → NP_001344630.1  Transcription factor bHLH130

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has six introns.
      Source sequence(s)
      DN205416, EU960591
      UniProtKB/TrEMBL
      A0A1D6IF18, B6T6H6
      Conserved Domains (1) summary
      cd00083
      Location:302 → 353
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      165743601..165746504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008653228.4 → XP_008651450.1  uncharacterized protein LOC100282357 isoform X2

      UniProtKB/TrEMBL
      A0A1D6IF18
      Conserved Domains (1) summary
      cd00083
      Location:329 → 380
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. XM_008653226.4 → XP_008651448.1  uncharacterized protein LOC100282357 isoform X1

      UniProtKB/TrEMBL
      A0A1D6IF18
      Conserved Domains (1) summary
      cd00083
      Location:365 → 416
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    3. XM_035960587.1 → XP_035816480.1  uncharacterized protein LOC100282357 isoform X3

      UniProtKB/TrEMBL
      A0A1D6IF18
      Conserved Domains (1) summary
      cd11393
      Location:267 → 319
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

    RNA

    1. XR_004851231.1 RNA Sequence

    2. XR_555436.4 RNA Sequence

    3. XR_004851232.1 RNA Sequence

    4. XR_555437.4 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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