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    LOC100280215 putative bZIP transcription factor superfamily protein [ Zea mays ]

    Gene ID: 100280215, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100280215
    Gene description
    putative bZIP transcription factor superfamily protein
    Locus tag
    ZEAMMB73_Zm00001d050669
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G118870
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    Genomic context

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    See LOC100280215 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (115232369..115238577, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (114052511..114058719, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene 2-cys peroxiredoxin BAS1 Neighboring gene magnesium/proton exchanger-like Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC100277190

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative bZIP transcription factor superfamily protein isoform 1; putative bZIP transcription factor superfamily protein
    Names
    bZIP protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001153146.2 → NP_001146618.2  putative bZIP transcription factor superfamily protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      BT068415, DV509058
      UniProtKB/TrEMBL
      A0A3L6F5S6, B6TRL0, C0PJE6
      Conserved Domains (1) summary
      cd14703
      Location:186 → 230
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      115232369..115238577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008678920.4 → XP_008677142.1  putative bZIP transcription factor superfamily protein isoform X1

      See identical proteins and their annotated locations for XP_008677142.1

      UniProtKB/TrEMBL
      A0A3L6F5S6, B6TRL0, C0PJE6
      Conserved Domains (1) summary
      cd14703
      Location:186 → 230
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    2. XM_008678921.4 → XP_008677143.1  putative bZIP transcription factor superfamily protein isoform X1

      See identical proteins and their annotated locations for XP_008677143.1

      UniProtKB/TrEMBL
      A0A3L6F5S6, B6TRL0, C0PJE6
      Conserved Domains (1) summary
      cd14703
      Location:186 → 230
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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