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    si:ch211-254c8.3 si:ch211-254c8.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100006139, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:ch211-254c8.3provided by ZNC
    Official Full Name
    si:ch211-254c8.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-130
    See related
    AllianceGenome:ZFIN:ZDB-GENE-100922-130
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See si:ch211-254c8.3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (1959415..1970840, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (2480614..2486320, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zgc:152753 Neighboring gene zgc:165583 Neighboring gene GTPase IMAP family member 9 Neighboring gene si:dkey-88j15.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    GTPase IMAP family member 9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      1959415..1970840 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471788.2 → XP_021327463.1  GTPase IMAP family member 9-like

      UniProtKB/TrEMBL
      A0A8M9PKE5
      Conserved Domains (1) summary
      cd01852
      Location:26 → 224
      AIG1; AvrRpt2-Induced Gene 1 (AIG1)
    Nucleotide Protein Strain
    Heading Accession and Version

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