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    LOC18586939 cleavage stimulation factor subunit 77 [ Theobroma cacao (cacao) ]

    Gene ID: 18586939, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18586939
    Gene description
    cleavage stimulation factor subunit 77
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18586939 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 10 NC_030859.1 (16053934..16081701, complement)

    Chromosome 10 - NC_030859.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g13420, mitochondrial Neighboring gene B3 domain-containing protein At3g25182-like Neighboring gene gamma-tubulin complex component 5 Neighboring gene probable disease resistance protein At4g27220 Neighboring gene uncharacterized LOC108663632

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030859.1 Chromosome 10 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage stimulation factor subunit 77

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030859.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      16053934..16081701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007010546.2 → XP_007010608.2  cleavage stimulation factor subunit 77 isoform X4

      UniProtKB/TrEMBL
      A0A061FR79

    2. XM_007010547.2 → XP_007010609.2  cleavage stimulation factor subunit 77 isoform X2

      UniProtKB/TrEMBL
      A0A061FR79

    3. XM_018129329.1 → XP_017984818.1  cleavage stimulation factor subunit 77 isoform X3

      UniProtKB/TrEMBL
      A0A061FQQ9

    4. XM_018129328.1 → XP_017984817.1  cleavage stimulation factor subunit 77 isoform X1

      UniProtKB/TrEMBL
      A0A061FQQ9

    5. XM_018129332.1 → XP_017984821.1  cleavage stimulation factor subunit 77 isoform X7

      UniProtKB/TrEMBL
      A0A061FX80

    6. XM_018129331.1 → XP_017984820.1  cleavage stimulation factor subunit 77 isoform X6

      UniProtKB/TrEMBL
      A0A061FX80

    7. XM_018129330.1 → XP_017984819.1  cleavage stimulation factor subunit 77 isoform X5

      UniProtKB/TrEMBL
      A0A061FX80
    Nucleotide Protein
    Heading Accession and Version

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