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    LOC18611220 F-box-like/WD repeat-containing protein TBL1XR1 [ Theobroma cacao (cacao) ]

    Gene ID: 18611220, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC18611220
    Gene description
    F-box-like/WD repeat-containing protein TBL1XR1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18611220 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (3188600..3196073)

    Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 81E8 Neighboring gene cytochrome P450 81D11 Neighboring gene pentatricopeptide repeat-containing protein ELI1, chloroplastic Neighboring gene zinc finger protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box-like/WD repeat-containing protein TBL1X; F-box-like/WD repeat-containing protein TBL1XR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      3188600..3196073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018127481.1 → XP_017982970.1  F-box-like/WD repeat-containing protein TBL1X isoform X1

      UniProtKB/TrEMBL
      A0A061DNN6

    2. XM_018127483.1 → XP_017982972.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X2

      UniProtKB/TrEMBL
      A0A061DNN6

    3. XM_018127486.1 → XP_017982975.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X3

      UniProtKB/TrEMBL
      A0A061DNN6
    Nucleotide Protein
    Heading Accession and Version

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