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    LOC18592271 biotin--protein ligase 2 [ Theobroma cacao (cacao) ]

    Gene ID: 18592271, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC18592271
    Gene description
    biotin--protein ligase 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18592271 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 8 NC_030857.1 (6020933..6026857, complement)

    Chromosome 8 - NC_030857.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1 Neighboring gene oxysterol-binding protein-related protein 1C Neighboring gene histone-lysine N-methyltransferase ASHR1 Neighboring gene histone-lysine N-methyltransferase ASHR1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030857.1 Chromosome 8 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables biotin--[biotin carboxyl-carrier protein] ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    biotin--protein ligase 1, chloroplastic; biotin--protein ligase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030857.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      6020933..6026857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007018903.2 → XP_007018965.2  biotin--protein ligase 2 isoform X3

      UniProtKB/TrEMBL
      A0A061FFX0

    2. XM_018126271.1 → XP_017981760.1  biotin--protein ligase 2 isoform X1

      UniProtKB/TrEMBL
      A0A061FFX0

    3. XM_018126273.1 → XP_017981762.1  biotin--protein ligase 2 isoform X2

      UniProtKB/TrEMBL
      A0A061FHQ5

    4. XM_007018904.2 → XP_007018966.2  biotin--protein ligase 1, chloroplastic isoform X4

      UniProtKB/TrEMBL
      A0A061FGN4

    RNA

    1. XR_001929127.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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