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    LOC18593222 uridine kinase-like protein 3 [ Theobroma cacao (cacao) ]

    Gene ID: 18593222, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18593222
    Gene description
    uridine kinase-like protein 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18593222 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 7 NC_030856.1 (466703..473495, complement)

    Chromosome 7 - NC_030856.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g08160 Neighboring gene fructose-bisphosphate aldolase, cytoplasmic isozyme 1 Neighboring gene kinesin KP1 Neighboring gene uncharacterized LOC18593224

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030856.1 Chromosome 7 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uridine kinase-like protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030856.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      466703..473495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007020332.2 → XP_007020394.1  uridine kinase-like protein 3

      See identical proteins and their annotated locations for XP_007020394.1

      UniProtKB/TrEMBL
      A0A061FBQ2
      Conserved Domains (3) summary
      COG0572
      Location:45 → 252
      Udk; Uridine kinase [Nucleotide transport and metabolism]
      cd02023
      Location:49 → 247
      UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
      pfam14681
      Location:265 → 466
      UPRTase; Uracil phosphoribosyltransferase

    2. XM_018124723.1 → XP_017980212.1  uridine kinase-like protein 3

      UniProtKB/TrEMBL
      A0A061FBQ2
    Nucleotide Protein
    Heading Accession and Version

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