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    LOC18597166 arogenate dehydratase/prephenate dehydratase 1, chloroplastic [ Theobroma cacao (cacao) ]

    Gene ID: 18597166, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18597166
    Gene description
    arogenate dehydratase/prephenate dehydratase 1, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18597166 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 6 NC_030855.1 (25373914..25379154)

    Chromosome 6 - NC_030855.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 13C Neighboring gene uncharacterized LOC18597164 Neighboring gene putative lactoylglutathione lyase Neighboring gene 5'-adenylylsulfate reductase 2, chloroplastic Neighboring gene glucan endo-1,3-beta-glucosidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030855.1 Chromosome 6 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables arogenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prephenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arogenate dehydratase/prephenate dehydratase 1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030855.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      25373914..25379154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018123497.1 → XP_017978986.1  arogenate dehydratase/prephenate dehydratase 1, chloroplastic

    Nucleotide Protein
    Heading Accession and Version

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