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    LOC18598158 polyadenylation and cleavage factor homolog 4 [ Theobroma cacao (cacao) ]

    Gene ID: 18598158, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC18598158
    Gene description
    polyadenylation and cleavage factor homolog 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18598158 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 5 NC_030854.1 (4674344..4681417)

    Chromosome 5 - NC_030854.1Genomic Context describing neighboring genes Neighboring gene heat stress transcription factor A-3 Neighboring gene ribosome production factor 2 homolog Neighboring gene putative phytosulfokines 6 Neighboring gene PAN domain-containing protein At5g03700

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030854.1 Chromosome 5 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylation and cleavage factor homolog 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030854.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      4674344..4681417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007027558.2 → XP_007027620.2  polyadenylation and cleavage factor homolog 4 isoform X1

      UniProtKB/TrEMBL
      A0A061EUQ2

    2. XM_018121547.1 → XP_017977036.1  polyadenylation and cleavage factor homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A061EUQ2

    3. XM_007027559.2 → XP_007027621.2  polyadenylation and cleavage factor homolog 4 isoform X3

      UniProtKB/TrEMBL
      A0A061ETZ7
    Nucleotide Protein
    Heading Accession and Version

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