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    LOC18607089 30-kDa cleavage and polyadenylation specificity factor 30 [ Theobroma cacao (cacao) ]

    Gene ID: 18607089, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18607089
    Gene description
    30-kDa cleavage and polyadenylation specificity factor 30
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18607089 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (744189..749805)

    Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18607087 Neighboring gene accelerated cell death 11 Neighboring gene uncharacterized LOC18607090 Neighboring gene uncharacterized LOC18607091

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N6-methyladenosine-containing RNA reader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    30-kDa cleavage and polyadenylation specificity factor 30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      744189..749805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018116198.1 → XP_017971687.1  30-kDa cleavage and polyadenylation specificity factor 30

      UniProtKB/TrEMBL
      A0A061DY09

    2. XM_007041078.2 → XP_007041140.2  30-kDa cleavage and polyadenylation specificity factor 30

      UniProtKB/TrEMBL
      A0A061DY09
    Nucleotide Protein
    Heading Accession and Version

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