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    YIF1A Yip1 interacting factor homolog A, membrane trafficking protein [ Sus scrofa (pig) ]

    Gene ID: 100521064, updated on 17-Aug-2024

    Summary

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    Official Symbol
    YIF1Aprovided by VGNC
    Official Full Name
    Yip1 interacting factor homolog A, membrane trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:95025
    See related
    Ensembl:ENSSSCG00000012953
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in liver (RPKM 33.0), ovary (RPKM 28.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See YIF1A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (6097749..6101965)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (5171892..5178242)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene CD248 molecule Neighboring gene transmembrane protein 151A Neighboring gene cornichon family AMPA receptor auxiliary protein 2 Neighboring gene RAB1B, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YIF1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      6097749..6101965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013994066.2 → XP_013849520.1  protein YIF1A isoform X4

      UniProtKB/TrEMBL
      A0A8D1HRV5
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 278
      YIF1; YIF1

    2. XM_013994064.2 → XP_013849518.1  protein YIF1A isoform X1

      UniProtKB/TrEMBL
      A0A8D0NRG8
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 330
      YIF1; YIF1

    3. XM_013994068.2 → XP_013849522.1  protein YIF1A isoform X5

      UniProtKB/TrEMBL
      A0A8D1HRV5
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 252
      YIF1; YIF1

    4. XM_013994065.2 → XP_013849519.1  protein YIF1A isoform X2

      UniProtKB/TrEMBL
      A0A8D0NRG8
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 304
      YIF1; YIF1

    5. XM_013994069.2 → XP_013849523.1  protein YIF1A isoform X6

      UniProtKB/TrEMBL
      A0A4X1TTT0, A0A8D1HRV5, A0A8D1V5Y1, F1RU41
      Related
      ENSSSCP00000013772.3, ENSSSCT00000014158.5
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 234
      YIF1; YIF1

    6. XM_003122500.6 → XP_003122548.1  protein YIF1A isoform X3

      UniProtKB/TrEMBL
      A0A286ZZB6, A0A4X1TTW2, A0A8D0NRG8, A0A8D1Y229
      Related
      ENSSSCP00000036812.1, ENSSSCT00000055267.2
      Conserved Domains (1) summary
      pfam03878
      Location:62 → 286
      YIF1; YIF1
    Nucleotide Protein
    Heading Accession and Version

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