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    LOC18610371 photosynthetic NDH subunit of lumenal location 2, chloroplastic [ Theobroma cacao (cacao) ]

    Gene ID: 18610371, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18610371
    Gene description
    photosynthetic NDH subunit of lumenal location 2, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (40063519..40066047)

    Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene NAC transcription factor 29 Neighboring gene cytochrome P450 704B1 Neighboring gene uncharacterized endoplasmic reticulum membrane protein C16E8.02 Neighboring gene casparian strip membrane protein 1 Neighboring gene uncharacterized LOC18610373 Neighboring gene KH domain-containing protein At4g18375

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthetic electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosynthetic NDH subunit of lumenal location 2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      40063519..40066047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007045979.2 → XP_007046041.1  photosynthetic NDH subunit of lumenal location 2, chloroplastic

      See identical proteins and their annotated locations for XP_007046041.1

      UniProtKB/TrEMBL
      A0A061EB55
      Conserved Domains (1) summary
      cl23783
      Location:52 → 200
      PsbQ; Oxygen evolving enhancer protein 3 (PsbQ)

    RNA

    1. XR_001926793.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases