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    LOC18608816 indole-3-acetic acid-amido synthetase GH3.17 [ Theobroma cacao (cacao) ]

    Gene ID: 18608816, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18608816
    Gene description
    indole-3-acetic acid-amido synthetase GH3.17
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18608816 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (12229745..12232773)

    Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108660797 Neighboring gene indole-3-acetic acid-amido synthetase GH3.17 Neighboring gene uncharacterized LOC18608818 Neighboring gene uncharacterized protein At4g14100

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indole-3-acetic acid-amido synthetase GH3.17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      12229745..12232773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018116591.1 → XP_017972080.1  indole-3-acetic acid-amido synthetase GH3.17 isoform X2

      UniProtKB/TrEMBL
      A0A061EBA9

    2. XM_007043690.2 → XP_007043752.2  indole-3-acetic acid-amido synthetase GH3.17 isoform X1

      UniProtKB/TrEMBL
      A0A061EBA9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases