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    LOC18602164 protein TIFY 6A [ Theobroma cacao (cacao) ]

    Gene ID: 18602164, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18602164
    Gene description
    protein TIFY 6A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18602164 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 4 NC_030853.1 (22454653..22457231, complement)

    Chromosome 4 - NC_030853.1Genomic Context describing neighboring genes Neighboring gene protein NSP-INTERACTING KINASE 1 Neighboring gene ADP-ribosylation factor-like protein 8B Neighboring gene RING finger and transmembrane domain-containing protein 2 Neighboring gene actin cytoskeleton-regulatory complex protein pan1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030853.1 Chromosome 4 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 10b; protein TIFY 6A; uncharacterized protein LOC18602164

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030853.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      22454653..22457231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018119207.1 → XP_017974696.1  protein TIFY 6A isoform X2

      UniProtKB/TrEMBL
      A0A061EI86

    2. XM_018119208.1 → XP_017974697.1  uncharacterized protein LOC18602164 isoform X3

      UniProtKB/TrEMBL
      A0A061EI86

    3. XM_018119206.1 → XP_017974695.1  uncharacterized protein LOC18602164 isoform X1

      UniProtKB/TrEMBL
      A0A061EI86

    4. XM_007033380.2 → XP_007033442.2  protein TIFY 10b isoform X4

      UniProtKB/TrEMBL
      A0A061EI86

    5. XM_018119210.1 → XP_017974699.1  protein TIFY 6A isoform X5

      UniProtKB/TrEMBL
      A0A061EI86
    Nucleotide Protein
    Heading Accession and Version

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