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    LOC18600621 ATP-citrate synthase alpha chain protein 2 [ Theobroma cacao (cacao) ]

    Gene ID: 18600621, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18600621
    Gene description
    ATP-citrate synthase alpha chain protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18600621 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 5 NC_030854.1 (39069749..39073239)

    Chromosome 5 - NC_030854.1Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SPT16 Neighboring gene FACT complex subunit SPT16 Neighboring gene peroxidase 5 Neighboring gene uncharacterized LOC18600624

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030854.1 Chromosome 5 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables succinate-CoA ligase (ADP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in succinyl-CoA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of succinate-CoA ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-citrate synthase alpha chain protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030854.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      39069749..39073239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007031173.2 → XP_007031235.1  ATP-citrate synthase alpha chain protein 2

      See identical proteins and their annotated locations for XP_007031235.1

      UniProtKB/TrEMBL
      A0A061F505
      Conserved Domains (3) summary
      PLN02235
      Location:1 → 423
      PLN02235; ATP citrate (pro-S)-lyase
      pfam16114
      Location:244 → 418
      Citrate_bind; ATP citrate lyase citrate-binding
      cl17255
      Location:5 → 202
      ATP-grasp_4; ATP-grasp domain
    Nucleotide Protein
    Heading Accession and Version

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