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    LOC18596499 calcyclin-binding protein [ Theobroma cacao (cacao) ]

    Gene ID: 18596499, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18596499
    Gene description
    calcyclin-binding protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18596499 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 6 NC_030855.1 (21966163..21970138)

    Chromosome 6 - NC_030855.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18596497 Neighboring gene beta-amyrin synthase Neighboring gene katanin p60 ATPase-containing subunit A-like 2 Neighboring gene gibberellin 2-beta-dioxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030855.1 Chromosome 6 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S100 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcyclin-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030855.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      21966163..21970138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018123612.1 → XP_017979101.1  calcyclin-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A061GKV9

    2. XM_007025011.2 → XP_007025073.1  calcyclin-binding protein isoform X3

      See identical proteins and their annotated locations for XP_007025073.1

      UniProtKB/TrEMBL
      A0A061GCY1
      Conserved Domains (1) summary
      cd06468
      Location:75 → 163
      p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...

    3. XM_007025010.2 → XP_007025072.1  calcyclin-binding protein isoform X1

      See identical proteins and their annotated locations for XP_007025072.1

      UniProtKB/TrEMBL
      A0A061GKV9
      Conserved Domains (2) summary
      cd06468
      Location:77 → 165
      p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
      PLN03088
      Location:26 → 208
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    Nucleotide Protein
    Heading Accession and Version

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