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    LOC18590719 inner membrane protein PPF-1, chloroplastic [ Theobroma cacao (cacao) ]

    Gene ID: 18590719, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18590719
    Gene description
    inner membrane protein PPF-1, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18590719 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (36485247..36491849)

    Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18590717 Neighboring gene heat shock cognate 70 kDa protein 2 Neighboring gene CLAVATA3/ESR (CLE)-related protein 46 Neighboring gene osmotin-like protein Neighboring gene ubiquitin-conjugating enzyme E2 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables membrane insertase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein insertion into membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thylakoid membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inner membrane protein PPF-1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      36485247..36491849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018127988.1 → XP_017983477.1  inner membrane protein PPF-1, chloroplastic

      UniProtKB/TrEMBL
      A0A061GXD4

    2. XM_018127989.1 → XP_017983478.1  inner membrane protein PPF-1, chloroplastic

      UniProtKB/TrEMBL
      A0A061GXD4

    3. XM_018127987.1 → XP_017983476.1  inner membrane protein PPF-1, chloroplastic

      UniProtKB/TrEMBL
      A0A061GXD4

    4. XM_007016402.2 → XP_007016464.2  inner membrane protein PPF-1, chloroplastic

      UniProtKB/TrEMBL
      A0A061GXD4

    5. XM_018127986.1 → XP_017983475.1  inner membrane protein PPF-1, chloroplastic

      UniProtKB/TrEMBL
      A0A061GXD4
    Nucleotide Protein
    Heading Accession and Version

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