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    LOC18590316 ferredoxin, root R-B2 [ Theobroma cacao (cacao) ]

    Gene ID: 18590316, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18590316
    Gene description
    ferredoxin, root R-B2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18590316 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (34087887..34090997, complement)

    Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene 60S ribosomal protein L10a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plastid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin, root R-B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      34087887..34090997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007015754.2 → XP_007015816.1  ferredoxin, root R-B2

      See identical proteins and their annotated locations for XP_007015816.1

      UniProtKB/TrEMBL
      A0A061GU95
      Conserved Domains (1) summary
      TIGR02008
      Location:54 → 150
      fdx_plant; ferredoxin [2Fe-2S]

    2. XM_018127294.1 → XP_017982783.1  ferredoxin, root R-B2

      UniProtKB/TrEMBL
      A0A061GU95
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases