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    LOC18589036 histone-lysine N-methyltransferase ASHR3 [ Theobroma cacao (cacao) ]

    Gene ID: 18589036, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18589036
    Gene description
    histone-lysine N-methyltransferase ASHR3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18589036 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (9242036..9256420)

    Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene protein TSS Neighboring gene heptahelical transmembrane protein 2 Neighboring gene AP2-like ethylene-responsive transcription factor At1g16060 Neighboring gene gamma-glutamyl peptidase 5 Neighboring gene uncharacterized LOC18589038

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase ASHR3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      9242036..9256420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018127814.1 → XP_017983303.1  histone-lysine N-methyltransferase ASHR3 isoform X3

    2. XM_018127813.1 → XP_017983302.1  histone-lysine N-methyltransferase ASHR3 isoform X2

    3. XM_007013842.2 → XP_007013904.1  histone-lysine N-methyltransferase ASHR3 isoform X1

      See identical proteins and their annotated locations for XP_007013904.1

      UniProtKB/TrEMBL
      A0A061GQ33
      Conserved Domains (3) summary
      smart00570
      Location:281 → 321
      AWS; associated with SET domains
      smart00317
      Location:321 → 444
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      cl22851
      Location:114 → 161
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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