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    LOC18613126 probable arabinose 5-phosphate isomerase [ Theobroma cacao (cacao) ]

    Gene ID: 18613126, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18613126
    Gene description
    probable arabinose 5-phosphate isomerase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18613126 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (27064327..27066145, complement)

    Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 21/22 Neighboring gene lysine-specific demethylase JMJ703 Neighboring gene uncharacterized LOC108662220 Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate derivative binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate derivative metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable arabinose 5-phosphate isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      27064327..27066145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007050211.2 → XP_007050273.2  probable arabinose 5-phosphate isomerase

      UniProtKB/TrEMBL
      A0A061DNZ0
    Nucleotide Protein
    Heading Accession and Version

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