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    LOC18612859 transcription factor PIF1 [ Theobroma cacao (cacao) ]

    Gene ID: 18612859, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18612859
    Gene description
    transcription factor PIF1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18612859 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (18830277..18837037, complement)

    Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 4 homolog A Neighboring gene zinc finger HIT domain-containing protein 3 Neighboring gene uncharacterized LOC18612860 Neighboring gene chaperonin CPN60-2, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PIF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      18830277..18837037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007049821.2 → XP_007049883.2  transcription factor PIF1 isoform X2

      UniProtKB/TrEMBL
      A0A061DMV9

    2. XM_018128120.1 → XP_017983609.1  transcription factor PIF1 isoform X3

      UniProtKB/TrEMBL
      A0A061DNN0

    3. XM_018128109.1 → XP_017983598.1  transcription factor PIF1 isoform X1

      UniProtKB/TrEMBL
      A0A061DMV9
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases