U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.
    • Unknown field was ignored: [has_clinical].

    XB5891636.L hypothetical protein LOC100127280 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100127280, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XB5891636.L
    Official Full Name
    hypothetical protein LOC100127280 L homeolog
    Primary source
    Xenbase:XB-GENE-5891641
    See related
    EnsemblRapid:ENSXLAG00005010481 AllianceGenome:Xenbase:XB-GENE-5891641
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    LOC100127280.L
    Summary
    Predicted to act upstream of or within collagen fibril organization. Predicted to be located in extracellular matrix and extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XB5891636.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (5917462..5919984)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694822.1 (10597..11692, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016698243.1 (1098..1472)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121401368 Neighboring gene hemagglutinin/amebocyte aggregation factor Neighboring gene golgin subfamily A member 6-like protein 22 Neighboring gene cilia- and flagella-associated protein 251-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within collagen fibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC100127280

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112852.1 → NP_001106323.1  uncharacterized protein LOC100127280 precursor

      See identical proteins and their annotated locations for NP_001106323.1

      Status: PREDICTED

      Source sequence(s)
      BC155364
      UniProtKB/TrEMBL
      A9JTJ2
      Related
      ENSXLAP00005030932.1, ENSXLAT00005031697.1
      Conserved Domains (1) summary
      pfam14704
      Location:31 → 174
      DERM; Dermatopontin

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      5917462..5919984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials