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    LOC100248677 protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [ Vitis vinifera (wine grape) ]

    Gene ID: 100248677, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100248677
    Gene description
    protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
    Locus tag
    VIT_00034505001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100248677 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (24556788..24559749, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (20208089..20211048, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene F-box protein SKIP2 Neighboring gene FHA domain-containing protein PS1 Neighboring gene tetratricopeptide repeat domain-containing protein PYG7, chloroplastic Neighboring gene uncharacterized LOC132253207 Neighboring gene exosome complex component RRP45A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to acidic pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to aluminum ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      24556788..24559749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019216722.2 → XP_019072267.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

      UniProtKB/TrEMBL
      A0A438EMM9, A5BSF5

    2. XM_059734462.1 → XP_059590445.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

      UniProtKB/TrEMBL
      A0A438EMM9, A5BSF5

    3. XM_019216721.2 → XP_019072266.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

      UniProtKB/TrEMBL
      A0A438EMM9, A5BSF5
    Nucleotide Protein
    Heading Accession and Version

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