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    LOC100251621 transcription factor ILR3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100251621, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100251621
    Gene description
    transcription factor ILR3
    Locus tag
    VIT_00030640001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0030528 GO:0003677 GO:0005634 GO:0045449
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    Genomic context

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    See LOC100251621 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (7396198..7399559, complement)
    102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (7357731..7361089, complement)

    Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein BDA1 Neighboring gene uclacyanin 1 Neighboring gene uncharacterized LOC100256871 Neighboring gene uncharacterized LOC109123560 Neighboring gene beta-amylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ILR3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

      Range
      7396198..7399559 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002274793.5 → XP_002274829.2  transcription factor ILR3

      UniProtKB/TrEMBL
      A0A438FEY0, F6HIM0
      Conserved Domains (2) summary
      cd11446
      Location:84 → 159
      bHLH_AtILR3_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein IAA-leucine resistant 3 (ILR3) and similar proteins
      cl28929
      Location:114 → 231
      VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)
    Nucleotide Protein
    Heading Accession and Version

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