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    LOC100261713 telomere repeat-binding factor 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100261713, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100261713
    Gene description
    telomere repeat-binding factor 1
    Locus tag
    VIT_00037816001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0000786 GO:0005694 GO:0005634 GO:0045449; GO:0003677 GO:0000786 GO:0005694 GO:0005634 GO:0045449 GO:0006355 GO:0007001 GO:0006334
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    Genomic context

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    See LOC100261713 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (7569086..7587469, complement)
    102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (7563890..7582152, complement)

    Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene LIM domain-containing protein WLIM1 Neighboring gene uncharacterized LOC100251573 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene nucleobase-ascorbate transporter 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere repeat-binding factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

      Range
      7569086..7587469 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002266830.4 → XP_002266866.2  telomere repeat-binding factor 1

      See identical proteins and their annotated locations for XP_002266866.2

      Conserved Domains (4) summary
      smart00526
      Location:124 → 181
      H15; Domain in histone families 1 and 5
      smart00717
      Location:5 → 56
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00268
      Location:53 → 176
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

    2. XM_010649608.2 → XP_010647910.1  telomere repeat-binding factor 1

      See identical proteins and their annotated locations for XP_010647910.1

      Conserved Domains (4) summary
      smart00526
      Location:124 → 181
      H15; Domain in histone families 1 and 5
      smart00717
      Location:5 → 56
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00268
      Location:53 → 176
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...
    Nucleotide Protein
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