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    LOC100254514 heat stress transcription factor A-1b [ Vitis vinifera (wine grape) ]

    Gene ID: 100254514, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254514
    Gene description
    heat stress transcription factor A-1b
    Locus tag
    VIT_00024378001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254514 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 16 NC_081820.1 (1749591..1753944)
    102 previous assembly 12X (GCF_000003745.3) 16 NC_012022.3 (1762628..1766983)

    Chromosome 16 - NC_081820.1Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase MCC1 Neighboring gene uncharacterized LOC100264883 Neighboring gene syntaxin-22 Neighboring gene binding partner of ACD11 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor A-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081820.1 Reference ASM3070453v1 Primary Assembly

      Range
      1749591..1753944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002273913.5 → XP_002273949.1  heat stress transcription factor A-1b

      UniProtKB/TrEMBL
      A0A438G3M2, F6HEE6
      Conserved Domains (1) summary
      smart00415
      Location:17 → 109
      HSF; heat shock factor
    Nucleotide Protein
    Heading Accession and Version

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