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    LOC100247259 trihelix transcription factor DF1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100247259, updated on 29-Sep-2023

    Summary

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    Gene symbol
    LOC100247259
    Gene description
    trihelix transcription factor DF1
    Locus tag
    VIT_00026588001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100247259 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (23393370..23396113, complement)
    102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (21315744..21318511, complement)

    Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100267710 Neighboring gene uncharacterized LOC100264411 Neighboring gene protein BOLA2 Neighboring gene fibrillin-5, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trihelix transcription factor DF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

      Range
      23393370..23396113 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002276897.4 → XP_002276933.1  trihelix transcription factor DF1

      UniProtKB/TrEMBL
      A0A438CNK7, F6I0I8
      Conserved Domains (1) summary
      cd12203
      Location:326 → 391
      GT1; GT1, myb-like, SANT family
    Nucleotide Protein
    Heading Accession and Version

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