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    LOC100233069 GAGA-binding transcriptional activator BBR/BPC4-like [ Vitis vinifera (wine grape) ]

    Gene ID: 100233069, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100233069
    Gene description
    GAGA-binding transcriptional activator BBR/BPC4-like
    Locus tag
    VIT_00024162001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100233069 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (686816..692076)
    102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (679168..684423)

    Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene NADP-dependent D-sorbitol-6-phosphate dehydrogenase Neighboring gene polyprenol reductase 2 Neighboring gene bZIP transcription factor 29 Neighboring gene tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like Neighboring gene transfer RNA leucine (anticodon CAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Santi L, et al. Plant J, 2003 Jun. PMID 12795701

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GAGA-binding transcriptional activator BBR/BPC4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281089.1 → NP_001268018.1  GAGA-binding transcriptional activator BBR/BPC4-like

      See identical proteins and their annotated locations for NP_001268018.1

      Status: PROVISIONAL

      Source sequence(s)
      EU597745
      UniProtKB/TrEMBL
      A0A438DM85, A0A438I9K7, B2Z456
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 307
      GAGA_bind; GAGA binding protein-like family

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

      Range
      686816..692076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010646738.3 → XP_010645040.1  GAGA-binding transcriptional activator BBR/BPC4-like isoform X2

      UniProtKB/TrEMBL
      A0A438DM85
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 282
      GAGA_bind; GAGA binding protein-like family

    2. XM_019217692.2 → XP_019073237.1  GAGA-binding transcriptional activator BBR/BPC4-like isoform X1

      UniProtKB/TrEMBL
      A0A438DM85, A0A438I9K7, B2Z456
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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