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    LOC100256368 probable transcription factor KAN2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100256368, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100256368
    Gene description
    probable transcription factor KAN2
    Locus tag
    VIT_00024383001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0005634 GO:0045449
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    Genomic context

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    See LOC100256368 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 16 NC_081820.1 (1812051..1816942)
    102 previous assembly 12X (GCF_000003745.3) 16 NC_012022.3 (1824989..1829634)

    Chromosome 16 - NC_081820.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase JMJ13 Neighboring gene uncharacterized LOC132252691 Neighboring gene uncharacterized LOC104877779 Neighboring gene uncharacterized LOC100853025 Neighboring gene uncharacterized LOC104881520

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable transcription factor KAN2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081820.1 Reference ASM3070453v1 Primary Assembly

      Range
      1812051..1816942
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002272601.5 → XP_002272637.1  probable transcription factor KAN2

      UniProtKB/TrEMBL
      A0A438G3L8, A0A438IY67
      Conserved Domains (1) summary
      TIGR01557
      Location:168 → 223
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version

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