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    Vmn2r-ps54 vomeronasal 2, receptor, pseudogene 54 [ Mus musculus (house mouse) ]

    Gene ID: 75835, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Vmn2r-ps54provided by MGI
    Official Full Name
    vomeronasal 2, receptor, pseudogene 54provided by MGI
    Primary source
    MGI:MGI:1351350
    See related
    Ensembl:ENSMUSG00000121286 AllianceGenome:MGI:1351350
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10948; Casr-rs5; Gprc2a-rs5; 1700108E19Rik; 4930562N12Rik
    Expression
    Biased expression in testis adult (RPKM 2.4), genital fat pad adult (RPKM 0.7) and 2 other tissues See more
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    Genomic context

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    See Vmn2r-ps54 in Genome Data Viewer
    Location:
    7 B3; 7 28.25 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (41317438..41376617)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (41668014..41727193)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:48888363-48888572 Neighboring gene predicted gene, 51480 Neighboring gene zinc finger protein 788 Neighboring gene STARR-seq mESC enhancer starr_18734 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene CTD nuclear envelope phosphatase 1 pseudogene Neighboring gene Cd9 antigen, pseudogene Neighboring gene vomeronasal 2, receptor, pseudogene 55 Neighboring gene vomeronasal 2, receptor, pseudogene 56 Neighboring gene STARR-seq mESC enhancer starr_18735 Neighboring gene vomeronasal 2, receptor 58

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A mouse model of human familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism. Ho C, et al. Nat Genet, 1995 Dec. PMID 7493018
    2. Identification of putative transmembrane receptor sequences homologous to the calcium-sensing G-protein-coupled receptor. Hinson TK, et al. Genomics, 1997 Oct 15. PMID 9344650
    3. Using an advanced intercross line to identify quantitative trait loci controlling immune response during collagen-induced arthritis. Yu X, et al. Genes Immun, 2007 Jun. PMID 17361202
    4. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    5. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Other Names

    • G protein-coupled receptor, family C, group 2, member A, related sequence 5
    • calcium sensing receptor, related sequence 5
    • vomeronasal 2, receptor 57 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_004441.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108827
      Related
      ENSMUST00000150147.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      41317438..41376617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_019244.1: Suppressed sequence

      Description
      NG_019244.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NM_029460.2: Suppressed sequence

      Description
      NM_029460.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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