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    LOC7463992 B-box zinc finger protein 19 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7463992, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7463992
    Gene description
    B-box zinc finger protein 19
    Locus tag
    POPTR_009G124400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7463992 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (10359546..10364058, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (10345821..10350331, complement)

    Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene fructose-bisphosphate aldolase 1, chloroplastic Neighboring gene putative transcription elongation factor SPT5 homolog 1 Neighboring gene kinesin-like protein KIN-7E Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photomorphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-box zinc finger protein 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      10359546..10364058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024607938.2 → XP_024463706.1  B-box zinc finger protein 19 isoform X1

      UniProtKB/TrEMBL
      A0A3N7FND9
      Conserved Domains (1) summary
      smart00336
      Location:52 → 96
      BBOX; B-Box-type zinc finger

    2. XM_002312973.4 → XP_002313009.1  B-box zinc finger protein 19 isoform X2

      See identical proteins and their annotated locations for XP_002313009.1

      UniProtKB/TrEMBL
      A0A3N7FND9
      Conserved Domains (1) summary
      smart00336
      Location:52 → 96
      BBOX; B-Box-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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