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    LOC18099311 BES1/BZR1 homolog protein 2 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18099311, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC18099311
    Gene description
    BES1/BZR1 homolog protein 2
    Locus tag
    POPTR_005G126400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC18099311 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (9493640..9495691, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (9948345..9950522, complement)

    Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ATHB-40 Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 Neighboring gene NEDD8-conjugating enzyme Ubc12 Neighboring gene cytochrome P450 CYP72A616-like Neighboring gene uncharacterized LOC18099314

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brassinosteroid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BES1/BZR1 homolog protein 2
    Names
    BES1 family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      9493640..9495691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006383179.3 → XP_006383241.1  BES1/BZR1 homolog protein 2

      See identical proteins and their annotated locations for XP_006383241.1

      UniProtKB/TrEMBL
      A9PI05
      Conserved Domains (1) summary
      pfam05687
      Location:6 → 115
      BES1_N; BES1/BZR1 plant transcription factor, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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