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    LOC18095445 BES1/BZR1 homolog protein 4 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18095445, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC18095445
    Gene description
    BES1/BZR1 homolog protein 4
    Locus tag
    POPTR_003G026600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC18095445 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (152494..156316, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (3197785..3201681, complement)

    Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g53430 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g53440 Neighboring gene uncharacterized LOC112326984 Neighboring gene uncharacterized LOC112326808 Neighboring gene gamma-glutamyl hydrolase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brassinosteroid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BES1/BZR1 homolog protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      152494..156316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006370038.3 → XP_006370100.1  BES1/BZR1 homolog protein 4 isoform X2

      See identical proteins and their annotated locations for XP_006370100.1

      UniProtKB/TrEMBL
      A9PB38
      Conserved Domains (1) summary
      pfam05687
      Location:31 → 104
      BES1_N; BES1/BZR1 plant transcription factor, N-terminal

    2. XM_006370039.3 → XP_006370101.1  BES1/BZR1 homolog protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006370101.1

      UniProtKB/TrEMBL
      A9PB38
      Conserved Domains (1) summary
      pfam05687
      Location:31 → 104
      BES1_N; BES1/BZR1 plant transcription factor, N-terminal

    3. XM_052451049.1 → XP_052307009.1  BES1/BZR1 homolog protein 4 isoform X3

      UniProtKB/TrEMBL
      U7DZC8

    4. XM_024596739.2 → XP_024452507.1  BES1/BZR1 homolog protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A3N7G1F0, U7DZC8
      Conserved Domains (1) summary
      pfam05687
      Location:3 → 56
      BES1_N; BES1/BZR1 plant transcription factor, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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